31 research outputs found

    Identification of Tumor Evolution Patterns by Means of Inductive Logic Programming

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    In considering key events of genomic disorders in the development and progression of cancer, the correlation between genomic instability and carcinogenesis is currently under investigation. In this work, we propose an inductive logic programming approach to the problem of modeling evolution patterns for breast cancer. Using this approach, it is possible to extract fingerprints of stages of the disease that can be used in order to develop and deliver the most adequate therapies to patients. Furthermore, such a model can help physicians and biologists in the elucidation of molecular dynamics underlying the aberrations-waterfall model behind carcinogenesis. By showing results obtained on a real-world dataset, we try to give some hints about further approach to the knowledge-driven validations of such hypotheses

    Pattern matching in high energy physics by using neural network and genetic algorithm

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    In this paper two different approaches to provide information from events by high energy physics experiments are shown. Usually the representations produced in such experiments are spot-composed and the classical algorithms to be needed for data analysis are time consuming. For this reason the possibility to speed up pattern recognition tasks by soft computing approach with parallel algorithms has been investigated. The first scheme shown in the following is a two-layer neural network with forward connections, the second one consists of an evolutionary algorithm with elitistic strategy and mutation and cross-over adaptive probability. Test results of these approaches have been carried out analysing a set of images produced by an optical ring imaging Cherenkov (RICH) detector at CERN

    On the use of temporal series of L-and X-band SAR data for soil moisture retrieval. Capitanata plain case study

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    This paper investigates the use of time series of ALOS/PALSAR-1 and COSMO-SkyMed data for the soil moisture retrieval (mv) by means of the SMOSAR algorithm. The application context is the exploitation of mv maps at a moderate spatial and temporal resolution for improving flood/drought monitoring at regional scale. The SAR data were acquired over the Capitanata plain in Southern Italy, over which ground campaigns were carried out in 2007, 2010 and 2011. The analysis shows that the mv retrieval accuracy is 5%-7% m^3/m^3 at L- and X band, although the latter is restricted to a use over nearly bare soil only

    Direct Scaling of Measure on Vortex Shedding through a Flapping Flag Device in the Open Channel around a Cylinder at Re ∌ 10^3: Taylor’s Law Approach.

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    none8noThe problem of vortex shedding, which occurs when an obstacle is placed in a regular flow, is governed by Reynolds and Strouhal numbers, known by dimensional analysis. The present work aims to propose a thin films-based device, consisting of an elastic piezoelectric flapping flag clamped at one end, in order to determine the frequency of vortex shedding downstream an obstacle for a flow field at Reynolds number Re∌103 in the open channel. For these values, Strouhal number obtained in such way is in accordance with the results known in literature. Moreover, the development of the voltage over time, generated by the flapping flag under the load due to flow field, shows a highly fluctuating behavior and satisfies Taylor’s law, observed in several complex systems. This provided useful information about the flow field through the constitutive law of the device.openSamuele De Bartolo, Massimo De Vittorio, Antonio Francone, Francesco Guido, Elisa Leone, Vincenzo Mariano Mastronardi, Andrea Notaro, Giuseppe Roberto TomasicchioDE BARTOLO, Samuele; DE VITTORIO, Massimo; Francone, Antonio; Guido, Francesco; Leone, Elisa; Mariano Mastronardi, Vincenzo; Notaro, Andrea; Tomasicchio, Giusepp

    A bioinformatics knowledge discovery in text application for grid computing

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    <p>Abstract</p> <p>Background</p> <p>A fundamental activity in biomedical research is Knowledge Discovery which has the ability to search through large amounts of biomedical information such as documents and data. High performance computational infrastructures, such as Grid technologies, are emerging as a possible infrastructure to tackle the intensive use of Information and Communication resources in life science. The goal of this work was to develop a software middleware solution in order to exploit the many knowledge discovery applications on scalable and distributed computing systems to achieve intensive use of ICT resources.</p> <p>Methods</p> <p>The development of a grid application for Knowledge Discovery in Text using a middleware solution based methodology is presented. The system must be able to: perform a user application model, process the jobs with the aim of creating many parallel jobs to distribute on the computational nodes. Finally, the system must be aware of the computational resources available, their status and must be able to monitor the execution of parallel jobs. These operative requirements lead to design a middleware to be specialized using user application modules. It included a graphical user interface in order to access to a node search system, a load balancing system and a transfer optimizer to reduce communication costs.</p> <p>Results</p> <p>A middleware solution prototype and the performance evaluation of it in terms of the speed-up factor is shown. It was written in JAVA on Globus Toolkit 4 to build the grid infrastructure based on GNU/Linux computer grid nodes. A test was carried out and the results are shown for the named entity recognition search of symptoms and pathologies. The search was applied to a collection of 5,000 scientific documents taken from PubMed.</p> <p>Conclusion</p> <p>In this paper we discuss the development of a grid application based on a middleware solution. It has been tested on a knowledge discovery in text process to extract new and useful information about symptoms and pathologies from a large collection of unstructured scientific documents. As an example a computation of Knowledge Discovery in Database was applied on the output produced by the KDT user module to extract new knowledge about symptom and pathology bio-entities.</p

    Infected pancreatic necrosis: outcomes and clinical predictors of mortality. A post hoc analysis of the MANCTRA-1 international study

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    : The identification of high-risk patients in the early stages of infected pancreatic necrosis (IPN) is critical, because it could help the clinicians to adopt more effective management strategies. We conducted a post hoc analysis of the MANCTRA-1 international study to assess the association between clinical risk factors and mortality among adult patients with IPN. Univariable and multivariable logistic regression models were used to identify prognostic factors of mortality. We identified 247 consecutive patients with IPN hospitalised between January 2019 and December 2020. History of uncontrolled arterial hypertension (p = 0.032; 95% CI 1.135-15.882; aOR 4.245), qSOFA (p = 0.005; 95% CI 1.359-5.879; aOR 2.828), renal failure (p = 0.022; 95% CI 1.138-5.442; aOR 2.489), and haemodynamic failure (p = 0.018; 95% CI 1.184-5.978; aOR 2.661), were identified as independent predictors of mortality in IPN patients. Cholangitis (p = 0.003; 95% CI 1.598-9.930; aOR 3.983), abdominal compartment syndrome (p = 0.032; 95% CI 1.090-6.967; aOR 2.735), and gastrointestinal/intra-abdominal bleeding (p = 0.009; 95% CI 1.286-5.712; aOR 2.710) were independently associated with the risk of mortality. Upfront open surgical necrosectomy was strongly associated with the risk of mortality (p &lt; 0.001; 95% CI 1.912-7.442; aOR 3.772), whereas endoscopic drainage of pancreatic necrosis (p = 0.018; 95% CI 0.138-0.834; aOR 0.339) and enteral nutrition (p = 0.003; 95% CI 0.143-0.716; aOR 0.320) were found as protective factors. Organ failure, acute cholangitis, and upfront open surgical necrosectomy were the most significant predictors of mortality. Our study confirmed that, even in a subgroup of particularly ill patients such as those with IPN, upfront open surgery should be avoided as much as possible. Study protocol registered in ClinicalTrials.Gov (I.D. Number NCT04747990)
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